The introduction of comparative rRNA sequence analysis represents a major milestone in the history of microbiology. The current taxonomy of prokaryotes as well as modern probe and chip based identification methods are mainly based upon rRNA derived phylogenetic conclusions. Also of importance is single gene based phylogenetic inference and alternative global markers include elongation and initiation factors, RNA polymerase subunits, DNA gyrases, heat shock and recA proteins. Although the comparative analyses are hampered by the generally low phylogenetic information content, and different resolution power, and multiple copies of the individual markers, the domain and prokaryotic phyla concept is globally supported read more ...

from Molecular Phylogeny of Microorganisms by Aharon Oren and R. Thane Papke (2010)

References

• Molecular Phylogeny of Microorganisms
• Lab-on-a-Chip Technology
• Real-Time PCR: Current Technology and Applications
• Environmental Molecular Microbiology
• Metagenomics

Labels: Chip based identification, DNA gyrase, Elongation factor, Global markers, Heat shock, Phylogenetic analysis, Phylogenetic inference, RecA, RNA polymerase, rRNA sequence analysis, Taxonomy of prokaryotes